References: Viroids

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Elena, S. F., Dopazo, J., de la Peña, M., Flores, R., Diener, T. O. & Moya, A. (2001). Phylogenetic analysis of viroid and viroid-like satellite RNAs from plants: a reassessment. J Mol Evol 53, 155-9. [PubMed]

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Flores, R., Gago-Zachert, S., Serra, P., Sanjuán, R. & Elena, S. F. (2014). Viroids: survivors from the RNA world? Annu Rev Microbiol 68, 395-414. [PubMed]

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Flores, R., Navarro, B., Delgado, S., Serra, P. & Di Serio, F. (2020). Viroid pathogenesis: a critical appraisal of the role of RNA silencing in triggering the initial molecular lesion. FEMS Microbiol Rev 44, 386-398. [PubMed]

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Lee, B. D., Neri, U., Roux, S., Wolf, Y. I., Camargo, A. P., Krupovic, M., Simmonds, P., Kyrpides, N., Gophna, U., Dolja, V. V. & Koonin, E. V. (2023). Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs. Cell 186, 646-661.e4. [PubMed]

López-Carrasco, A. & Flores, R. (2017). Dissecting the secondary structure of the circular RNA of a nuclear viroid in vivo: A naked rod-like conformation similar but not identical to that observed in vitro. RNA Biol 14, 1046-1054. [PubMed]

Malfitano, M., Di Serio, F., Covelli, L., Ragozzino, A., Hernández, C. & Flores, R. (2003). Peach latent mosaic viroid variants inducing peach calico (extreme chlorosis) contain a characteristic insertion that is responsible for this symptomatology. Virology 313, 492-501. [PubMed]

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Minoia, S., Navarro, B., Covelli, L., Barone, M., García-Becedas, M. T., Ragozzino, A., Alioto, D., Flores, R. & Di Serio, F. (2014). Viroid-like RNAs from cherry trees affected by leaf scorch disease: further data supporting their association with mycoviral double-stranded RNAs. Arch Virol 159, 589-93. [PubMed]

Navarro, B., Flores, R. & Di Serio, F. (2021). Advances in viroid-host interactions. Annu Rev Virol 8, 305-325. [PubMed]

Navarro, B., Gómez, G. & Pallás, V. (2024). Replication and movement of viroids in host plants. In Fundamentals of Viroid BIology, pp. 64-81. Edited by C. R. Adkar-Purushothama, T. Sano, J.-P. Perreault, S. M. Yanjarappa, F. Di Serio & J.-A. Daròs. London, UK: Academic Press – Elsevier.

Navarro, B., Li, S., Gisel, A., Chiumenti, M., Minutolo, M., Alioto, D. & Di Serio, F. (2022). A novel self-cleaving viroid-like RNA identified in RNA preparations from a citrus tree Is not directly associated with the plant. Viruses 14, e2265. [PubMed]

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Olmedo-Velarde, A., Navarro, B., Hu, J. S., Melzer, M. J. & Di Serio, F. (2020). Novel fig-associated viroid-like RNAs containing hammerhead ribozymes in both polarity strands identified by high-throughput sequencing. Front Microbiol 11, 1903. [PubMed]

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Salazar, L., Hammond, R., Diener, T. & Owens, R. (1988). Analysis of viroid replication following Agrobacterium-mediated inoculation of non-host species with potato spindle tuber viroid cDNA. J Gen Virol 69, 879-889.

Sanger, H. L., Klotz, G., Riesner, D., Gross, H. J. & Kleinschmidt, A. K. (1976). Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures. Proc Natl Acad Sci U S A 73, 3852-6. [PubMed]

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Steyn, C., Cook, G., Burger, J. & Maree, H. (2016). Construction and application of infectious citrus viroids for biological indexing. Journal of Citrus Pathology 3, https://escholarship.org/uc/item/0057d2hb.

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Wang, M. B., Bian, X. Y., Wu, L. M., Liu, L. X., Smith, N. A., Isenegger, D., Wu, R. M., Masuta, C., Vance, V. B., Watson, J. M., Rezaian, A., Dennis, E. S. & Waterhouse, P. M. (2004). On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites. Proc Natl Acad Sci U S A 101, 3275-80. [PubMed]

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Wang, Y., Zirbel, C. L., Leontis, N. B. & Ding, B. (2018). RNA 3-dimensional structural motifs as a critical constraint of viroid RNA evolution. PLoS Pathog 14, e1006801. [PubMed]