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References
dsDNA Viruses

References: Ampullaviridae

References: Ampullaviridae

 

Gudbergsdóttir, S. R., Menzel, P., Krogh, A., Young, M. & Peng, X. (2016).  Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs. Environ Microbiol 18, 863-874. [PubMed]

  • Read more about References: Ampullaviridae
Authors
dsDNA Viruses

Authors: Ampullaviridae

Authors: Ampullaviridae

 

David Prangishvili*
Archaeal viruses Study Group Chair
Institut Pasteur
Department of Microbiology
25, rue du Dr. Roux
75015 Paris, France
E-mail: david.prangishvili@pasteur.fr

Mart Krupovic*
Institut Pasteur
Department of Microbiology
25, rue du Dr. Roux
75015 Paris, France
E-mail: mart.krupovic@pasteur.fr

  • Read more about Authors: Ampullaviridae
Genus
dsDNA Viruses

Genus: Bottigliavirus

Family: Ampullaviridae

Genus: Bottigliavirus

 

Distinguishing features

Since only one genus is currently recognized, the genus description corresponds to the family description. 

Species demarcation criteria

Ninety five percent global genome identity is used as a species demarcation criterion.

  • Read more about Genus: Bottigliavirus
Genus
dsDNA Viruses

Genus: Zetapolyomavirus

Family: Polyomaviridae

Genus: Zetapolyomavirus

 

Distinguishing features

Members belong to a single species and infect dolphins. Dolphin polyomavirus 1 (DPyV) can cause respiratory disease in its host. 

Virion

See discussion under family description. 

  • Read more about Genus: Zetapolyomavirus
Genus
dsDNA Viruses

Genus: Epsilonpolyomavirus

Family: Polyomaviridae

Genus: Epsilonpolyomavirus

 

Distinguishing features

Members infect cetartiodactyls. A distinguishing genomic feature is the presence of 2 introns in the LTAg CDS. 

Virion

See discussion under family description. 

Genome organization and replication

See discussion under family description. 

  • Read more about Genus: Epsilonpolyomavirus
Genus
dsDNA Viruses

Genus: Deltapolyomavirus

Family: Polyomaviridae

Genus: Deltapolyomavirus

 

Distinguishing features

Some members of the genus are detected on the skin such as human polyomavirus 6 (HPyV6) and human polyomavirus 7 (HPyV7) while other members of the genus are detected in the gastrointestinal tract, such as MW polyomavirus (MWPyV) and STL polyomavirus (STLPyV). 

Virion

See discussion under family description. 

  • Read more about Genus: Deltapolyomavirus
Genus
dsDNA Viruses

Genus: Gammapolyomavirus

Family: Polyomaviridae

Genus: Gammapolyomavirus

 

Distinguishing features

Members infect only birds. Some cause severe illness and even death, but oncogenicity has not been observed. 

Virion

See discussion under family description. 

Genome organization and replication

See discussion under family description. 

  • Read more about Genus: Gammapolyomavirus
Genus
dsDNA Viruses

Genus: Betapolyomavirus

Family: Polyomaviridae

Genus: Betapolyomavirus

 

Distinguishing features

The best-studied human polyomaviruses, BK polyomavirus (BKPyV) and JC polyomavirus (JCPyV) belong to this genus and are associated with nephropathy and progressive multifocal leukoencephalopathy, respectively. 

Virion

See discussion under family description. 

  • Read more about Genus: Betapolyomavirus
Genus
dsDNA Viruses

Genus: Alphapolyomavirus

Family: Polyomaviridae

Genus: Alphapolyomavirus

 

Distinguishing features

Members infect humans and other mammals. Merkel cell polyomavirus (MCPyV) and raccoon polyomavirus RacPyV) are so far the only members known to cause cancer in their natural host. 

Virion

See discussion under family description. 

Genome organization and replication

See discussion under family description. 

  • Read more about Genus: Alphapolyomavirus
Resources
dsDNA Viruses

Resources: Polyomaviridae

Resources: Polyomaviridae

 

 Sequence alignments and tree files:

Figure 3. Polyomaviridae: 

Tree file (newick format)

Alignment file (FASTA format)

  • Read more about Resources: Polyomaviridae

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