References: Roniviridae


Boonyaratpalin, S., K. Supamattaya, J. Kasornchandra, S. Direkbusaracom, U. Aekpanithanpong and C. Chantanachooklin (1993). Non-occluded baculo-like virus, the causative agent of yellow head disease in the black tiger shrimp (Penaeus monodon). J Fish Pathology 28: 103-9.

Brierley, I. (1995). Ribosomal frameshifting on viral RNAs. J Gen Virol 76: 1885-92.

Castro-Longoria, R., N. Quintero-Arredondo, J. M. Grijalva-Chon and J. Ramos-Paredes (2008). Detection of the yellow-head virus (YHV) in wild blue shrimp, Penaeus stylirostris, from the Gulf of California and its experimental transmission to the Pacific white shrimp, Penaeus vannamei. J Fish Dis 31: 953-6. [PubMed]

Chantanachookin, C., S. Boonyaratpalin, J. Kasornchandra, S. Direkbusarakom, U. Ekpanithanpong, K. Supamataya, S. Sriurairatana and T. W. Flegel (1993). Histology and ultrastructure reveal a new granulosis-like virus in Penaeus monodon affected by yellow-head disease. Dis Aquat Org 17: 145-57.

Chen, J., W. Wang, X. Wang, Q. Zhang, Y. Ren, J. Song, X. Wang, X. Dong and J. Huang (2018). First detection of yellow head virus genotype 3 (YHV-3) in cultured Penaeus monodon, mainland China. J Fish Dis 41: 1449-51. [PubMed]

Cowley, J. A., L. C. Cadogan, K. M. Spann, N. Sittidilokratna and P. J. Walker (2004). The gene encoding the nucleocapsid protein of Gill-associated nidovirus of Penaeus monodon prawns is located upstream of the glycoprotein gene. J Virol 78: 8935-41. [PubMed]

Cowley, J. A., C. M. Dimmock, K. M. Spann and P. J. Walker (2000). Gill-associated virus of Penaeus monodon prawns: an invertebrate virus with ORF1a and ORF1b genes related to arteri- and coronaviruses. J Gen Virol 81: 1473-84. [PubMed]

Cowley, J. A., C. M. Dimmock, K. M. Spann and P. J. Walker (2001). Gill-associated virus of Penaeus monodon prawns. Molecular evidence for the first invertebrate nidovirus. Adv Exp Med Biol 494: 43-8. [PubMed]

Cowley, J. A., C. M. Dimmock and P. J. Walker (2002a). Gill-associated nidovirus of Penaeus monodon prawns transcribes 3'-coterminal subgenomic mRNAs that do not possess 5'-leader sequences. J Gen Virol 83: 927-35. [PubMed]

Cowley, J. A., M. R. Hall, L. C. Cadogan, K. M. Spann and P. J. Walker (2002b). Vertical transmission of gill-associated virus (GAV) in the black tiger prawn Penaeus monodon. Dis Aquat Organ 50: 95-104. [PubMed]

Cowley, J. A., M. Rao, P. Mohr, N. J. Moody, M. J. Sellars and M. S. Crane (2019). TaqMan real-time and conventional nested PCR tests specific to yellow head virus genotype 7 (YHV7) identified in giant tiger shrimp in Australia. J Virol Methods 273: 113689. [PubMed]

Cowley, J. A. and P. J. Walker (2002). The complete genome sequence of gill-associated virus of Penaeus monodon prawns indicates a gene organisation unique among nidoviruses. Arch Virol 147: 1977-87. [PubMed]

Cowley, J. A. and P. J. Walker (2008). Molecular biology and pathogenesis of roniviruses. In Nidoviruses, pp. 361-77. Edited by S. Perlman, T. Gallagher & E. J. Snijder: American Society of Microbiology.

Dhar, A. K., J. A. Cowley, K. W. Hasson and P. J. Walker (2004). Genomic organization, biology, and diagnosis of Taura syndrome virus and yellowhead virus of penaeid shrimp. Adv Virus Res 63: 353-421. [PubMed]

Dong, X., S. Liu, L. Zhu, X. Wan, Q. Liu, L. Qiu, P. Zou, Q. Zhang and J. Huang (2017). Complete genome sequence of an isolate of a novel genotype of yellow head virus from Fenneropenaeus chinensis indigenous in China. Arch Virol 162: 1149-52. [PubMed]

Firth, A. E. and J. F. Atkins (2009). Evidence for a novel coding sequence overlapping the 5'-terminal approximately 90 codons of the gill-associated and yellow head okavirus envelope glycoprotein gene. Virol J 6: 222. [PubMed]

Flegel, T. W., S. Boonyaratpalin and B. Withyachumnarnkul (1997). Progress in research on yellow-head virus and white-spot virus in Thailand. In Diseases in Asian aquaculture III, pp. 285-96. Edited by T. W. Flegel & I. H. Macrae. Manila, Philippines.

Flegel, T. W., S. Sriurairatana, C. Wongteerasupaya, V. Boonsaeng, S. Panyim and B. Withyachumnarnkul (1995). Progress in characterization and control of yellow-head virus of Penaeus monodon. In Swimming through troubled water: Proceedings of the Special Session on Shrimp Farming, Aquaculture, pp. 76-83. Edited by C. L. Browdy & J. S. Hopkins. Baton Rouge, USA: World Aquaculture Society.

Gangnonngiw, W., G. Anantasomboon, W. Sang-oum, S. Sriurairatana, K. Sritunyalucksana and T. W. Flegel (2009). Non-virulence of a recombinant shrimp nidovirus is associated with its non structural gene sequence and not a large structural gene deletion. Virology 385: 161-8. [PubMed]

Gorbalenya, A. E., L. Enjuanes, J. Ziebuhr and E. J. Snijder (2006). Nidovirales: evolving the largest RNA virus genome. Virus Res 117: 17-37. [PubMed]

Hooper, C., P. P. Debnath, S. Biswas, R. van Aerle, K. S. Bateman, S. K. Basak, M. M. Rahman, C. V. Mohan, H. M. R. Islam, S. Ross, G. D. Stentiford, D. Currie and D. Bass (2020). A novel RNA Virus, Macrobrachium rosenbergii Golda virus (MrGV), linked to mass mortalities of the larval giant freshwater prawn in Bangladesh. Viruses 12: e1120. [PubMed]

Jitrapakdee, S., S. Unajak, N. Sittidilokratna, R. A. J. Hodgson, J. A. Cowley, P. J. Walker, S. Panyim and V. Boonsaeng (2003). Identification and analysis of gp116 and gp64 structural glycoproteins of yellow head nidovirus of Penaeus monodon shrimp. J Gen Virol 84: 863-73. [PubMed]

Jones, D. T., W. R. Taylor and J. M. Thornton (1992). The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275-82. [PubMed]

Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-20. [PubMed]

Kumar, S., G. Stecher and K. Tamura (2016). MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol 33: 1870-4. [PubMed]

Lauber, C. and A. E. Gorbalenya (2012). Partitioning the genetic diversity of a virus family: approach and evaluation through a case study of picornaviruses. J Virol 86: 3890-904. [PubMed]

Lauber, C., J. Ziebuhr, S. Junglen, C. Drosten, F. Zirkel, P. T. Nga, K. Morita, E. J. Snijder and A. E. Gorbalenya (2012). Mesoniviridae: a proposed new family in the order Nidovirales formed by a single species of mosquito-borne viruses. Arch Virol 157: 1623-8. [PubMed]

Lehmann, K. C., A. Gulyaeva, J. C. Zevenhoven-Dobbe, G. M. Janssen, M. Ruben, H. S. Overkleeft, P. A. van Veelen, D. V. Samborskiy, A. A. Kravchenko, A. M. Leontovich, I. A. Sidorov, E. J. Snijder, C. C. Posthuma and A. E. Gorbalenya (2015). Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses. Nucleic Acids Res 43: 8416-34. [PubMed]

Lele, S. and M. L. Taper (2002). A composite likelihood approach to (co) variance components estimation. Journal of Statistical Planning Inference 103: 117-35.

Liu, Q., J. Huang, H.-L. Yang, B. Yang, S. Liu, H.-L. Wang, Q.-T. Wang, F. Liu and Q.-L. Zhang (2014). Detection of a new genotype of yellow-head virus in farmed shrimp suspicious of EMS/AHPNS infection [In Chinese" target="ictvref">PubMed]. Oceanologia et Limnologia Sinica 45: 703-9.

Longyant, S., S. Sattaman, P. Chaivisuthangkura, S. Rukpratanporn, W. Sithigorngul and P. Sithigorngul (2006). Experimental infection of some penaeid shrimps and crabs by yellow head virus (YHV). Aquac Asia 257: 83-91.

Longyant, S., P. Sithigorngul, P. Chaivisuthangkura, S. Rukpratanporn, W. Sithigorngul and P. Menasveta (2005). Differences in susceptibility of palaemonid shrimp species to yellow head virus (YHV) infection. Dis Aquat Organ 64: 5-12. [PubMed]

Meng, F., Y. Wang, G. Wang, T. Hu, L. Xu, K. F. J. Tang, W. Shi, F. Zhang, X. Dong and J. Huang (2021). Complete genome sequence of Macrobrachium rosenbergii Golda virus (MrGV) from China. Animals 12: e0027. [PubMed]

Mohr, P. G., N. J. Moody, J. Hoad, L. M. Williams, R. O. Bowater, D. M. Cummins, J. A. Cowley and J. C. M. St (2015). New yellow head virus genotype (YHV7) in giant tiger shrimp Penaeus monodon indigenous to northern Australia. Dis Aquat Organ 115: 263-8. [PubMed]

Nadala, E. C. B., L. M. Tapay and P. C. Loh (1997). Yellow-head virus: a rhabdovirus-like pathogen of penaeid shrimp. Diseases of Aquatic Organisms 31: 141-6.

Nga, P. T., C. Parquet Mdel, C. Lauber, M. Parida, T. Nabeshima, F. Yu, N. T. Thuy, S. Inoue, T. Ito, K. Okamoto, A. Ichinose, E. J. Snijder, K. Morita and A. E. Gorbalenya (2011). Discovery of the first insect nidovirus, a missing evolutionary link in the emergence of the largest RNA virus genomes. PLoS Pathog 7: e1002215. [PubMed]

Nieva, J. L., V. Madan and L. Carrasco (2012). Viroporins: structure and biological functions. Nat Rev Microbiol 10: 563-74. [PubMed]

Oanh, D. T., M. C. van Hulten, J. A. Cowley and P. J. Walker (2011). Pathogenicity of gill-associated virus and Mourilyan virus during mixed infections of black tiger shrimp (Penaeus monodon). J Gen Virol 92: 893-901. [PubMed]

Pasternak, A. O., W. J. Spaan and E. J. Snijder (2006). Nidovirus transcription: how to make sense...? J Gen Virol 87: 1403-21. [PubMed]

Saberi, A., A. A. Gulyaeva, J. L. Brubacher, P. A. Newmark and A. E. Gorbalenya (2018). A planarian nidovirus expands the limits of RNA genome size. PLoS Pathog 14: e1007314. [PubMed]

Shi, M., X.-D. Lin, J.-H. Tian, L.-J. Chen, X. Chen, C.-X. Li, X.-C. Qin, J. Li, J.-P. Cao, J.-S. Eden, J. Buchmann, W. Wang, J. Xu, E. C. Holmes and Y.-Z. Zhang (2016). Redefining the invertebrate RNA virosphere. Nature 540: 539-43. [PubMed]

Sithigorngul, P., P. Chauychuwong, W. Sithigorngul, S. Longyant, P. Chaivisuthangkura and P. Menasveta (2000). Development of a monoclonal antibody specific to yellow head virus (YHV) from Penaeus monodon. Dis Aquat Organ 42: 27-34. [PubMed]

Sithigorngul, P., S. Rukpratanporn, S. Longyant, P. Chaivisuthangkura, W. Sithigorngul and P. Menasveta (2002). Monoclonal antibodies specific to yellow-head virus (YHV) of Penaeus monodon. Dis Aquat Organ 49: 71-6. [PubMed]

Sittidilokratna, N., C. Chotwiwatthanakun, P. K. Wijegoonawardane, S. Unajak, A. Boonnad, W. Wangnai, S. Jitrapakdee, J. A. Cowley and P. J. Walker (2009). A virulent isolate of yellow head nidovirus contains a deformed envelope glycoprotein gp116. Virology 384: 192-200. [PubMed]

Sittidilokratna, N., S. Dangtip, J. A. Cowley and P. J. Walker (2008). RNA transcription analysis and completion of the genome sequence of yellow head nidovirus. Virus Res 136: 157-65. [PubMed]

Sittidilokratna, N., R. A. Hodgson, J. A. Cowley, S. Jitrapakdee, V. Boonsaeng, S. Panyim and P. J. Walker (2002). Complete ORF1b-gene sequence indicates yellow head virus is an invertebrate nidovirus. Dis Aquat Organ 50: 87-93. [PubMed]

Sittidilokratna, N., N. Phetchampai, V. Boonsaeng and P. J. Walker (2006). Structural and antigenic analysis of the yellow head virus nucleocapsid protein p20. Virus Res 116: 21-9. [PubMed]

Soowannayan, C., J. A. Cowley, R. D. Pearson, T. P. Wallis, J. J. Gorman, W. P. Michalski and P. J. Walker (2010). Glycosylation of gp116 and gp64 envelope proteins of yellow head virus of Penaeus monodon shrimp. J Gen Virol 91: 2463-73. [PubMed]

Soowannayan, C., T. W. Flegel, P. Sithigorngul, J. Slater, A. Hyatt, S. Cramerri, T. Wise, M. S. Crane, J. A. Cowley, R. J. McCulloch and P. J. Walker (2003). Detection and differentiation of yellow head complex viruses using monoclonal antibodies. Dis Aquat Organ 57: 193-200. [PubMed]

Spann, K. M., J. A. Cowley, P. J. Walker and R. J. G. Lester (1997). A yellow-head-like virus from Penaeus monodon cultured in Australia. Dis Aquat Organ 31: 169-79.

Spann, K. M., R. A. Donaldson, J. A. Cowley and P. J. Walker (2000). Differences in the susceptibility of some penaeid prawn species to gill-associated virus (GAV) infection. Dis Aquat Organ 42: 221-5. [PubMed]

Spann, K. M., R. J. McCulloch, J. A. Cowley, I. J. East and P. J. Walker (2003). Detection of gill-associated virus (GAV) by in situ hybridization during acute and chronic infections of Penaeus monodon and P. esculentus. Dis Aquat Organ 56: 1-10. [PubMed]

Spann, K. M., J. E. Vickers and R. J. G. Lester (1995). Lymphoid organ virus of Penaeus monodon from Australia. Dis Aquat Organ 23: 127-34.

van Vliet, A. L., S. L. Smits, P. J. Rottier and R. J. de Groot (2002). Discontinuous and non-discontinuous subgenomic RNA transcription in a nidovirus. EMBO J 21: 6571-80. [PubMed]

Vasilakis, N., H. Guzman, C. Firth, N. L. Forrester, S. G. Widen, T. G. Wood, S. L. Rossi, E. Ghedin, V. Popov, K. R. Blasdell, P. J. Walker and R. B. Tesh (2014). Mesoniviruses are mosquito-specific viruses with extensive geographic distribution and host range. Virol J 11: 97. [PubMed]

Walker, P. J. and C. V. Mohan (2009). Viral disease emergence in shrimp aquaculture: origins, impact and the effectiveness of health management strategies. Rev Aquac 1: 125-54. [PubMed]

Wang, Y.-C. and P.-S. Chang (2000). Yellow head virus infection in the giant tiger prawn Penaeus monodon cultured in Taiwan. Fish Pathology 35: 1-10.

Whelan, S. and N. Goldman (2001). A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18: 691-9. [PubMed]

Wijegoonawardane, P. K., J. A. Cowley, T. Phan, R. A. Hodgson, L. Nielsen, W. Kiatpathomchai and P. J. Walker (2008). Genetic diversity in the yellow head nidovirus complex. Virology 380: 213-25. [PubMed]

Wijegoonawardane, P. K., N. Sittidilokratna, N. Petchampai, J. A. Cowley, N. Gudkovs and P. J. Walker (2009). Homologous genetic recombination in the yellow head complex of nidoviruses infecting Penaeus monodon shrimp. Virology 390: 79-88. [PubMed]

Wongteerasupaya, C., S. Sriurairatana, J. E. Vickers, A. Akrajamorn, V. Boonsaeng, S. Panyim, A. Tassanakajon, B. Withyachumnarnkul and T. W. Flegel (1995). Yellow-head virus of Penaeus monodon is an RNA virus. Dis Aquat Organ 22: 45-50.

Zeng, C., A. Wu, Y. Wang, S. Xu, Y. Tang, X. Jin, S. Wang, L. Qin, Y. Sun, C. Fan, E. J. Snijder, B. W. Neuman, Y. Chen, T. Ahola and D. Guo (2016). Identification and characterization of a ribose 2'-O-methyltransferase encoded by the ronivirus branch of Nidovirales. J Virol 90: 6675-85. [PubMed]

Zhu, L. L., Q. L. Zhang, X. Y. Wan, L. Qiu, F. Ma and J. Huang (2016). Molecular epidemiology of a new yellow head virus strain in China. Progress in Fishery Sciences (in Chinese) 37: 68-77.

Ziebuhr, J., S. Bayer, J. A. Cowley and A. E. Gorbalenya (2003). The 3C-like proteinase of an invertebrate nidovirus links coronavirus and potyvirus homologs. J Virol 77: 1415-26. [PubMed]