References: Hypoviridae


Bryner, S. F., D. Rigling and P. C. Brunner (2012). Invasion history and demographic pattern of Cryphonectria hypovirus 1 across European populations of the chestnut blight fungus. Ecol Evol 2: 3227-41. [PubMed]

Chen, B., G. H. Choi and D. L. Nuss (1994). Attenuation of fungal virulence by synthetic infectious hypovirus transcripts. Science 264: 1762-4. [PubMed]

Chen, B. and D. L. Nuss (1999). Infectious cDNA clone of hypovirus CHV1-Euro7: a comparative virology approach to investigate virus-mediated hypovirulence of the chestnut blight fungus Cryphonectria parasitica. J Virol 73: 985-92. [PubMed]

Chiba, S., A. Jamal and N. Suzuki (2018). First evidence for internal ribosomal entry sites in diverse fungal virus genomes. MBio 9: doi:10.1128/mBio.02350-17 [PubMed]

Choi, G. H., D. M. Pawlyk and D. L. Nuss (1991a). The autocatalytic protease p29 encoded by a hypovirulence-associated virus of the chestnut blight fungus resembles the potyvirus-encoded protease HC-Pro. Virology 183: 747-52. [PubMed]

Choi, G. H., R. Shapira and D. L. Nuss (1991b). Cotranslational autoproteolysis involved in gene expression from a double-stranded RNA genetic element associated with hypovirulence of the chestnut blight fungus. Proc Natl Acad Sci USA 88: 1167-71. [PubMed]

Craven, M. G., D. M. Pawlyk, G. H. Choi and D. L. Nuss (1993). Papain-like protease p29 as a symptom determinant encoded by a hypovirulence-associated virus of the chestnut blight fungus. J Virol 67: 6513-21. [PubMed]

Deakin, G., E. Dobbs, J. M. Bennett, I. M. Jones, H. M. Grogan and K. S. Burton (2017). Multiple viral infections in Agaricus bisporus - Characterisation of 18 unique RNA viruses and 8 ORFans identified by deep sequencing. Sci Rep 7: 2469. [PubMed]

Dodds, J. A. (1980). Association of type 1 viral-like dsRNA with club-shaped particles in hypovirulent strains of Endothia parasitica. Virology 107: 1-12. [PubMed]

Du, Y., Y. Lin, X. Zhou, K. Wang, S. Fang and Q. Deng (2017). Full-length sequence and genome analysis of CHV1-CN280, a North China isolate of cryphonectria hypovirus 1. Arch Virol 162: 1811-8. [PubMed]

Fahima, T., P. Kazmierczak, D. R. Hansen, P. Pfeiffer and N. K. Van Alfen (1993). Membrane-associated replication of an unencapsidated double-strand RNA of the fungus, Cryphonectria parasitica. Virology 195: 81-9. [PubMed]

Fahima, T., Y. Wu, L. Zhang and N. K. Van Alfen (1994). Identification of the putative RNA polymerase of Cryphonectria hypovirus in a solubilized replication complex. J Virol 68: 6116-9. [PubMed]

Guo, L. H., L. Sun, S. Chiba, H. Araki and N. Suzuki (2009). Coupled termination/reinitiation for translation of the downstream open reading frame B of the prototypic hypovirus CHV1-EP713. Nucleic Acids Res 37: 3645-59. [PubMed]

Hansen, D. R., N. K. Van Alfen, K. Gillies and W. A. Powell (1985). Naked dsRNA associated with hypovirulence of Endothia parasitica is packaged in fungal vesicles. J Gen Virol 66: 2605-14.

Hillman, B. I., B. T. Halpern and M. P. Brown (1994). A viral dsRNA element of the chestnut blight fungus with a distinct genetic organization. Virology 201: 241-50. [PubMed]

Hiremath, S., B. L'Hostis, S. A. Ghabrial and R. E. Rhoads (1986). Terminal structure of hypovirulence-associated dsRNAs in the chestnut blight fungus Endothia parasitica. Nucleic Acids Res 14: 9877-96. [PubMed]

Hisano, S., R. Zhang, M. I. Faruk, H. Kondo and N. Suzuki (2017). A neo-virus lifestyle exhibited by a (+)ssRNA virus hosted in an unrelated dsRNA virus: Taxonomic and evolutionary considerations. Virus Research 244: 75-83. [PubMed]

Hu, Z., S. Wu, J. Cheng, Y. Fu, D. Jiang and J. Xie (2014). Molecular characterization of two positive-strand RNA viruses co-infecting a hypovirulent strain of Sclerotinia sclerotiorum. Virology 464-465: 450-9. [PubMed]

Jacob-Wilk, D., M. Turina and N. K. Van Alfen (2006). Mycovirus cryphonectria hypovirus 1 elements cofractionate with trans-Golgi network membranes of the fungal host Cryphonectria parasitica. J Virol 80: 6588-96. [PubMed]

Jensen, K. S. and D. L. Nuss (2014). Mutagenesis of the catalytic and cleavage site residues of the hypovirus papain-like proteases p29 and p48 reveals alternative processing and contributions to optimal viral RNA accumulation. J Virol 88: 11946-54. [PubMed]

Kalyaanamoorthy, S., B. Q. Minh, T. K. F. Wong, A. von Haeseler and L. S. Jermiin (2017). ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods 14: 587-9. [PubMed]

Katoh, K., J. Rozewicki and K. D. Yamada (2017). MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform doi: 10.1093/bib/bbx108. [PubMed]

Khalifa, M. E. and M. N. Pearson (2014). Characterisation of a novel hypovirus from Sclerotinia sclerotiorum potentially representing a new genus within the Hypoviridae. Virology 464-465: 441-9. [PubMed]

Koloniuk, I., M. H. El-Habbak, K. Petrzik and S. A. Ghabrial (2014). Complete genome sequence of a novel hypovirus infecting Phomopsis longicolla. Arch Virol 159: 1861-3. [PubMed]

Koonin, E. V., G. H. Choi, D. L. Nuss, R. Shapira and J. C. Carrington (1991). Evidence for common ancestry of a chestnut blight hypovirulence-associated double-stranded RNA and a group of positive-strand RNA plant viruses. Proc Natl Acad Sci USA 88: 10647-51. [PubMed]

Kwon, S. J., W. S. Lim, S. H. Park, M. R. Park and K. H. Kim (2007). Molecular characterization of a dsRNA mycovirus, Fusarium graminearum virus-DK21, which is phylogenetically related to hypoviruses but has a genome organization and gene expression strategy resembling those of plant potex-like viruses. Mol Cells 23: 304-15. [PubMed]

Li, P., X. Chen, H. He, D. Qiu and L. Guo (2017). Complete Genome Sequence of a Novel Hypovirus from the Phytopathogenic Fungus Fusarium langsethiae. Genome Announc 5. [PubMed]

Li, P., H. Zhang, X. Chen, D. Qiu and L. Guo (2015). Molecular characterization of a novel hypovirus from the plant pathogenic fungus Fusarium graminearum. Virology 481: 151-60. [PubMed]

Lin, H., X. Lan, H. Liao, T. B. Parsley, D. L. Nuss and B. Chen (2007). Genome sequence, full-length infectious cDNA clone, and mapping of viral double-stranded RNA accumulation determinant of hypovirus CHV1-EP721. J Virol 81: 1813-20. [PubMed]

Linder-Basso, D., J. N. Dynek and B. I. Hillman (2005). Genome analysis of Cryphonectria hypovirus 4, the most common hypovirus species in North America. Virology 337: 192-203. [PubMed]

Marzano, S. Y., H. A. Hobbs, B. D. Nelson, G. L. Hartman, D. M. Eastburn, N. K. McCoppin and L. L. Domier (2015). Transfection of Sclerotinia sclerotiorum with in vitro transcripts of a naturally occurring interspecific recombinant of Sclerotinia sclerotiorum hypovirus 2 significantly reduces virulence of the fungus. J Virol 89: 5060-71. [PubMed]

Marzano, S. Y., B. D. Nelson, O. Ajayi-Oyetunde, C. A. Bradley, T. J. Hughes, G. L. Hartman, D. M. Eastburn and L. L. Domier (2016). Identification of diverse mycoviruses through metatranscriptomics characterization of the viromes of five major fungal plant pathogens. J Virol 90: 6846-63. [PubMed]

Mu, R., T. A. Romero, K. A. Hanley and A. L. Dawe (2011). Conserved and variable structural elements in the 5' untranslated region of two hypoviruses from the filamentous fungus Cryphonectria parasitica. Virus Research 161: 203-8. [PubMed]

Neri, U., Y. I. Wolf, S. Roux, A. P. Camargo, B. D. Lee, D. Kazlauskas, I. M. Chen, N. Ivanova, L. Z. Allen and D. Paez-Espino (2022). A five-fold expansion of the global RNA virome reveals multiple new clades of RNA bacteriophages. bioRxiv.

Newhouse, J. R., H. C. Hoch and W. L. MacDonald (1983). The ultrastructure of Endothia parasitica. Comparison of a virulent with a hypovirulent isolate. Can J Botany 61: 389-99.

Newhouse, J. R., W. L. MacDonald and H. C. Hoch (1990). Virus-like particles in hyphae and conidia of European hypovirulent (dsRNA-containing) strains of Cryphonectria parasitica. Can J Botany 68: 90-101.

Nguyen, L. T., H. A. Schmidt, A. von Haeseler and B. Q. Minh (2015). IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 32: 268-74. [PubMed]

Nuss, D. L. (2011). Mycoviruses, RNA silencing, and viral RNA recombination. Adv Virus Res 80: 25-48. [PubMed]

Osaki, H., A. Sasaki, K. Nomiyama and K. Tomioka (2016). Multiple virus infection in a single strain of Fusarium poae shown by deep sequencing. Virus Genes 52: 835-47. [PubMed]

Peever, T. L., Y. C. Liu, K. Wang, B. I. Hillman, R. Foglia and M. G. Milgroom (1998). Incidence and Diversity of Double-Stranded RNAs Occurring in the Chestnut Blight Fungus, Cryphonectria parasitica, in China and Japan. Phytopathology 88: 811-7. [PubMed]

Petrzik, K., T. Sarkisova, J. Starý, I. Koloniuk, L. Hrabáková and O. Kubešová (2016). Molecular characterization of a new monopartite dsRNA mycovirus from mycorrhizal Thelephora terrestris (Ehrh.) and its detection in soil oribatid mites (Acari: Oribatida). Virology 489: 12-9. [PubMed]

Ruiz-Padilla, A., J. Rodríguez-Romero, I. Gómez-Cid, D. Pacifico and M. A. Ayllón (2021). Novel mycoviruses discovered in the mycovirome of a necrotrophic fungus. MBio 12: e03705-20. [PubMed]

Segers, G. C., X. Zhang, F. Deng, Q. Sun and D. L. Nuss (2007). Evidence that RNA silencing functions as an antiviral defense mechanism in fungi. Proc Natl Acad Sci USA 104: 12902-6. [PubMed]

Shapira, R., G. H. Choi, B. I. Hillman and D. L. Nuss (1991a). The contribution of defective RNAs to the complexity of viral-encoded double-stranded RNA populations present in hypovirulent strains of the chestnut blight fungus Cryphonectria parasitica. EMBO J 10: 741-6. [PubMed]

Shapira, R., G. H. Choi and D. L. Nuss (1991b). Virus-like genetic organization and expression strategy for a double-stranded RNA genetic element associated with biological control of chestnut blight. EMBO J 10: 731-9. [PubMed]

Shapira, R. and D. L. Nuss (1991). Gene expression by a hypovirulence-associated virus of the chestnut blight fungus involves two papain-like protease activities. Essential residues and cleavage site requirements for p48 autoproteolysis. J Biol Chem 266: 19419-25. [PubMed]

Smart, C. D., W. Yuan, R. Foglia, D. L. Nuss, D. W. Fulbright and B. I. Hillman (1999). Cryphonectria hypovirus 3, a virus species in the family Hypoviridae with a single open reading frame. Virology 265: 66-73. [PubMed]

Sun, L. and N. Suzuki (2008). Intragenic rearrangements of a mycoreovirus induced by the multifunctional protein p29 encoded by the prototypic hypovirus CHV1-EP713. RNA 14: 2557-71. [PubMed]

Sun, Q., G. H. Choi and D. L. Nuss (2009). A single Argonaute gene is required for induction of RNA silencing antiviral defense and promotes viral RNA recombination. Proc Natl Acad Sci USA 106: 17927-32. [PubMed]

Suzuki, N., L. M. Geletka and D. L. Nuss (2000). Essential and dispensable virus-encoded replication elements revealed by efforts To develop hypoviruses as gene expression vectors. J Virol 74: 7568-77. [PubMed]

Suzuki, N., K. Maruyama, M. Moriyama and D. L. Nuss (2003). Hypovirus papain-like protease p29 functions in trans to enhance viral double-stranded RNA accumulation and vertical transmission. J Virol 77: 11697-707. [PubMed]

Suzuki, N. and D. L. Nuss (2002). Contribution of protein p40 to hypovirus-mediated modulation of fungal host phenotype and viral RNA accumulation. J Virol 76: 7747-59. [PubMed]

Tartaglia, J., C. P. Paul, D. W. Fulbright and D. L. Nuss (1986). Structural properties of double-stranded RNAs associated with biological control of chestnut blight fungus. Proc Natl Acad Sci USA 83: 9109-13. [PubMed]

Wang, S., H. Kondo, L. Liu, L. Guo and D. Qiu (2013). A novel virus in the family Hypoviridae from the plant pathogenic fungus Fusarium graminearum. Virus Research 174: 69-77. [PubMed]

Wolf, Y. I., D. Kazlauskas, J. Iranzo, A. Lucía-Sanz, J. H. Kuhn, M. Krupovic, V. V. Dolja and E. V. Koonin (2018). Origins and evolution of the global RNA virome. MBio 9: e02329-18. [PubMed]

Xie, J., X. Xiao, Y. Fu, H. Liu, J. Cheng, S. A. Ghabrial, G. Li and D. Jiang (2011). A novel mycovirus closely related to hypoviruses that infects the plant pathogenic fungus Sclerotinia sclerotiorum. Virology 418: 49-56. [PubMed]

Yaegashi, H., S. Kanematsu and T. Ito (2012). Molecular characterization of a new hypovirus infecting a phytopathogenic fungus, Valsa ceratosperma. Virus Research 165: 143-50. [PubMed]

Yang, S., R. Dai, L. Salaipeth, L. Huang, J. Liu, I. B. Andika and L. Sun (2021). Infection of two heterologous mycoviruses reduces the virulence of Valsa mali, a fungal agent of apple valsa canker disease. Front Microbiol 12: 659210. [PubMed]

Yuan, W. and B. I. Hillman (2001). In vitro translational analysis of genomic, defective, and satellite RNAs of Cryphonectria hypovirus 3-GH2. Virology 281: 117-23. [PubMed]

Zhang, R., S. Liu, S. Chiba, H. Kondo, S. Kanematsu and N. Suzuki (2014). A novel single-stranded RNA virus isolated from a phytopathogenic filamentous fungus, Rosellinia necatrix, with similarity to hypo-like viruses. Front Microbiol 5: 360. [PubMed]

Zhang, X. and D. L. Nuss (2008). A host dicer is required for defective viral RNA production and recombinant virus vector RNA instability for a positive sense RNA virus. Proc Natl Acad Sci USA 105: 16749-54. [PubMed]

Zhang, X., G. C. Segers, Q. Sun, F. Deng and D. L. Nuss (2008). Characterization of hypovirus-derived small RNAs generated in the chestnut blight fungus by an inducible DCL-2-dependent pathway. J Virol 82: 2613-9. [PubMed]