Table 2 - Unassigned complete coding region sequences (March 2022)
UNASSIGNED COMPLETE CODING REGION SEQUENCES (March 2022)
Genotype1 Locus/Isolate(s)2 Accession no(s) Reference
Genotype 1
1_AJ851228 AJ851228 AJ851228 (Bracho et al., 2006)
1_KC248195 160526 KC248195 (Li et al., 2013)
1_HQ537007 CYHCV025 HQ537007 (Demetriou & Kostrikis, 2011)
1_KJ439780 QC60 KJ439780 (Lu et al., 2014)
1_KJ439776 QC152 KJ439776 (Lu et al., 2014)
1_KJ439777 QC180 KJ439777 (Lu et al., 2014)
1_KY348757 G1_bcn_new KY348757 (Ordeig et al., 2018)
1_MH921830 G1 MH921830 (von Massow et al., 2019)
Genotype 2
2_JF735119 QC331 JF735119 (Li et al., 2012)
2_JF735110 QC114 JF735110 (Li et al., 2012)
2_JF735117 QC297 JF735117 (Li et al., 2012)
2_JF735116 QC289 JF735116 (Li et al., 2012)
2_JF735118 QC302 JF735118 (Li et al., 2012)
2_KC197236 MRS41 KC197236 (Jordier et al., 2013)
2_KC197237 MRS117 KC197237 (Jordier et al., 2013)
2_KC197239 PTR9203 KC197239 (Jordier et al., 2013)
2_MW041294 116-04 MW041294, MW041296 (Rajhi et al., 2021)
Genotype 3
3_JF735124 QC115 JF735124 (Lu et al., 2013)
Genotype 4
4_JX227964 BID-G1253 JX227964 (Newman et al., 2013)
4_FJ0258543 P026 FJ025854 (Koletzki et al., 2009)
4_JF735127 QC108 JF735127 (Lu et al., 2015)
4_JF735132 QC215 JF735132 (Lu et al., 2015)
4_JF735131 QC147 JF735131 (Lu et al., 2015)
4_JF735130 QC132 JF735130 (Lu et al., 2015)
4_JF735129 QC127 JF735129 (Lu et al., 2015)
4_JF735138 QC58 JF735138 (Lu et al., 2015)
4_JF735135 QC352 JF735135 (Lu et al., 2015)
4_JF735134 QC253 JF735134 (Lu et al., 2015)
Genotype 5
5_KT595242 BF16 KT595242 (Henquell et al., 2016)
Genotype 6
6_JX183550 QC273 JX183550 (Wang et al., 2013)
6_JX183551 TV257, VN139 JX183551, KJ567644 (Li et al., 2014; Wang et al., 2013)
6_JX183553 TV533 JX183553 (Wang et al., 2013)
6_JX183554 L349 JX183554 (Wang et al., 2013)
6_JX183558 QC271 JX183558 (Wang et al., 2013)
6_KJ470620 HKP7 KJ470620 (An et al., 2014)
6_KJ470621 HKP16 KJ470621 (An et al., 2014)
6_KJ470622 HK25 KJ470622 (An et al., 2014)
6_KJ470623 HK26 KJ470623 (An et al., 2014)
6_KJ470624 HK38 KJ470624 (An et al., 2014)
6_KJ470625 HK43 KJ470625 (An et al., 2014)
6_KC844039 ZS96 KC844039 (Xu et al., 2013)
6_KC844040 ZS202 KC844040 (Xu et al., 2013)
6_KJ567652 TV566 KJ567652 (Li et al., 2014)
6_KJ567648 TV453 KJ567648 (Li et al., 2014)
6_KJ567650 TV548, TV443 KJ567650, KJ567649 (Li et al., 2014)
6_MG878999 1316-1 MG878999 (Wu et al., 2018)
6_MN240359 HVH-HCV334 MN240359 (Pedersen et al., 2019)
Footnotes
1 Classification of sequences into genotypes but without subtype assignments using the format “genotype_Accession number”
2 Locus (or isolate name if locus is the same as the accession number).
3 Previously described as 4b (Koletzki et al., 2009)
4 Previously described as 6k (Lu et al., 2006)
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