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minor errors in VMR

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Thanks very much for the new site, it looks great!

I've been working with the ICTV VMR (version VMR_19-250422_MSL37.xlsx) and found a few minor errors with the virus Genbank accession numbers. I hope this is an appropriate place to list them, please just move or remove if not.

I think that:

  • Carrot closterorivus 1, KF536973 should be KF533697 - KF536973 (https://www.ncbi.nlm.nih.gov/nuccore/KF536973)  is 'Legionella pneumophila strain O6 WZM (wzm) '..., KF533697 (https://www.ncbi.nlm.nih.gov/nuccore/KF533697)  is 'Carrot closterovirus isolate CUCV_S8, partial genome'.

 

  • Orivirus A, KT880664 should be KT880667 - KT880664 (https://www.ncbi.nlm.nih.gov/nuccore/KT880664) is 'Luthrodes pandava voucher CUJ33'..., KT880667 (https://www.ncbi.nlm.nih.gov/nuccore/KT880667) is 'Orivirus Pf-CHK1/OrV-A2, complete genome'.

 

  • Jeilongvirus erinacei, MN651699 should be MN561699 - MN651699 (https://www.ncbi.nlm.nih.gov/nuccore/MN651699) is 'Podarcis muralis voucher MOP1 NADH dehydrogenase subunit 1'..., MN561699 (https://www.ncbi.nlm.nih.gov/nuccore/MN561699) is 'Belerina virus isolate HH114, complete genome'.

 

  • Aspergillus fumigatus polymycovirus 1, dsRNA 4: LC517044; dsRNA 5: LC517046 should not include LC517046 (https://www.ncbi.nlm.nih.gov/nuccore/LC517046, Epichloe festucae epls mRNA for e-poly-L-lysine synthetase'...) for RNA 5, instead dsRNA 4 should be LC517045 (https://www.ncbi.nlm.nih.gov/nuccore/LC517045) and dsRNA 5: LC517044 ((https://www.ncbi.nlm.nih.gov/nuccore/LC517044).

 

  • Neoavian orthoreovirus, S1: KC795571 should be KF692095, KC795571 (https://www.ncbi.nlm.nih.gov/nuccore/KC795571) is 'Piscine reovirus isolate CGA280-05'..., from piscine reovirus, the next row of the table, KF692095 (https://www.ncbi.nlm.nih.gov/nuccore/KF692095) is 'Tvarminne avian virus segment S1, complete sequence'.

 

  • Avian orthoreovirus, M1: JX4782635, this ID doesn't exist in Genbank and should be JX478263 (https://www.ncbi.nlm.nih.gov/nuccore/JX478263) 'Muscovy duck reovirus strain J18 segment M1, complete sequence', this accession is then also consistent for the other accessions for the same virus.

 

  • Betascleroulivirus betaplasmoparae, N5326222, this ID doesn't exist in Genbank and should be MN532622 (https://www.ncbi.nlm.nih.gov/nuccore/MN532622) 'Plasmopara viticola lesion associated ourmia-like virus 35 isolate DMG-D_Contig5 RNA dependent RNA polymerase gene, complete cds'

 

  • Hymenopteran orthoplasmavirus 2, MW274737; MW274738; MW274739 - these IDs also don't exist - I think they may be pre-publication placeholder accessions, I wasn't able to find the correct updates for these.

 

  • The following are protein rather than nucleotide IDs (which is inconsistent with the rest of the table) but have linked nucleotide IDs as follows:
    • QJT73696 (Sclerotimonavirus alphabotrytidis) should be MN617150
    • QJT73698 (Sclerotimonavirus betabotrytidis) should be MN617151
    • QJT73701 (Botrytimonavirus alphabotrytidis) should be MN617152
    • QMP84020 (Sclerotimonavirus cryphonectriae) should be MT354565
    • QNQ73380 (Auricularimonavirus bondarzewiae) should be MT447187

 

I hope this is helpful, thank you for providing this resource.

Katy

Correcting the VMR

Hi Katy,

 

Thank-you for the feedback. The VMR takes a good bit of manual effort to keep it accurate and up-to-date, and we appreciate users such as yourself who have a keen eye and are able to spot data that needs to be updated/fixed.

I will pass on your list to the maintainers of the VMR and we will work to incorporate your updates into the next release.

Best,

Elliot

_______________________________________________________________________

Elliot J. Lefkowitz, Ph.D. | Professor
Department of Microbiology | https://scholars.uab.edu/display/elliotl
UAB | The University of Alabama at Birmingham

Data Secretary | International Committee on Taxonomy of Viruses | https://ictv.global/

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Thu, 07/28/2022 - 14:31
Elliot Lefkowitz
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Correcting the VMR

Perfect, thanks very much!

Profile picture for user KatyBrown
Wed, 08/03/2022 - 09:33
KatyBrown
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