References: Chaseviridae


Atkison, C. L., J. Boeckman, H. Newkirk, M. Liu, J. J. Gill, J. Cahill and J. Ramsey (2019). Complete genome sequence of Escherichia coli myophage Mangalitsa. Microbiol Resour Announc 8: e01045-01019. [PubMed]

Born, Y., L. Fieseler, J. Marazzi, R. Lurz, B. Duffy and M. J. Loessner (2011). Novel virulent and broad-host-range Erwinia amylovora bacteriophages reveal a high degree of mosaicism and a relationship to Enterobacteriaceae phages. Appl Environ Microbiol 77: 5945-5954. [PubMed]

Capella-Gutiérrez, S., J. M. Silla-Martínez and T. Gabaldón (2009). trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972-1973. [PubMed]

Chernomor, O., A. von Haeseler and B. Q. Minh (2016). Terrace aware data structure for phylogenomic inference from supermatrices. Syst Biol 65: 997-1008. [PubMed]

Conant, G. C. and K. H. Wolfe (2008). GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics 24: 861-862. [PubMed]

Hoang, D. T., O. Chernomor, A. von Haeseler, B. Q. Minh and L. S. Vinh (2018). UFBoot2: Improving the ultrafast bootstrap approximation. Mol Biol Evol 35: 518-522. [PubMed]

Jamalludeen, N., R. P. Johnson, R. Friendship, A. M. Kropinski, E. J. Lingohr and C. L. Gyles (2007). Isolation and characterization of nine bacteriophages that lyse O149 enterotoxigenic Escherichia coli. Vet Microbiol 124: 47-57. [PubMed]

Jamalludeen, N., A. M. Kropinski, R. P. Johnson, E. Lingohr, J. Harel and C. L. Gyles (2008). Complete genomic sequence of bacteriophage phiEcoM-GJ1, a novel phage that has myovirus morphology and a podovirus-like RNA polymerase. Appl Environ Microbiol 74: 516-525. [PubMed]

Kalyaanamoorthy, S., B. Q. Minh, T. K. F. Wong, A. von Haeseler and L. S. Jermiin (2017). ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods 14: 587-589. [PubMed]

Katoh, K. and D. M. Standley (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30: 772-780. [PubMed]

Kim, J. H., J. S. Son, Y. J. Choi, C. H. Choresca, S. P. Shin, J. E. Han, J. W. Jun, D. H. Kang, C. Oh, S. J. Heo and S. C. Park (2012). Isolation and characterization of a lytic Myoviridae bacteriophage PAS-1 with broad infectivity in Aeromonas salmonicida. Curr Microbiol 64: 418-426. [PubMed]

Letunic, I. and P. Bork (2019). Interactive Tree Of Life (iTOL) v4: recent updates and new developments. Nucleic Acids Res 47: W256-w259. [PubMed]

Li, L., C. J. Stoeckert, Jr. and D. S. Roos (2003). OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189. [PubMed]

Lim, J. A., H. Shin, D. H. Lee, S. W. Han, J. H. Lee, S. Ryu and S. Heu (2014). Complete genome sequence of the Pectobacterium carotovorum subsp. carotovorum virulent bacteriophage PM1. Arch Virol 159: 2185-2187. [PubMed]

Nguyen, L. T., H. A. Schmidt, A. von Haeseler and B. Q. Minh (2015). IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 32: 268-274. [PubMed]

Nishimura, Y., T. Yoshida, M. Kuronishi, H. Uehara, H. Ogata and S. Goto (2017). ViPTree: the viral proteomic tree server. Bioinformatics 33: 2379-2380. [PubMed]

Rohwer, F. and R. Edwards (2002). The phage proteomic tree: a genome-based taxonomy for phage. J Bacteriol 184: 4529-4535. [PubMed]

Terzian, P., E. Olo Ndela, C. Galiez, J. Lossouarn, R. E. Pérez Bucio, R. Mom, A. Toussaint, M. A. Petit and F. Enault (2021). PHROG: families of prokaryotic virus proteins clustered using remote homology. NAR Genom Bioinform 3: lqab067. [PubMed]

Tran, J., L. Lessor, C. O'Leary, J. Gill and M. Liu (2019). Complete genome sequence of Proteus mirabilis phage Myduc. Microbiol Resour Announc 8. [PubMed]