Table 2 - Unassigned complete coding region sequences
UNASSIGNED COMPLETE CODING REGION SEQUENCES (May 2019)
| Genotype1 | Locus/Isolate(s)2 | Accession no(s) | Reference |
|---|---|---|---|
| Genotype 1 | |||
| 1_AJ851228 | AJ851228 | AJ851228 | (Bracho et al., 2006) |
| 1_KC248195 | 160526 | KC248195 | (Li et al., 2013) |
| 1_HQ537007 | CYHCV025 | HQ537007 | (Demetriou & Kostrikis, 2011) |
| 1_KJ439780 | QC60 | KJ439780 | (Lu et al., 2014) |
| 1_KJ439776 | QC152 | KJ439776 | (Lu et al., 2014) |
| 1_KJ439777 | QC180 | KJ439777 | (Lu et al., 2014) |
| Genotype 2 | |||
| 2_JF735119 | QC331 | JF735119 | (Li et al., 2012) |
| 2_JF735110 | QC114 | JF735110 | (Li et al., 2012) |
| 2_JF735117 | QC297 | JF735117 | (Li et al., 2012) |
| 2_JF735116 | QC289 | JF735116 | (Li et al., 2012) |
| 2_JF735118 | QC302 | JF735118 | (Li et al., 2012) |
| 2_KC197236 | MRS41 | KC197236 | (Jordier et al., 2013) |
| 2_KC197237 | MRS117 | KC197237 | (Jordier et al., 2013) |
| 2_KC197239 | PTR9203 | KC197239 | (Jordier et al., 2013) |
| Genotype 3 | |||
| 3_JF735124 | QC115 | JF735124 | (Lu et al., 2013) |
| Genotype 4 | |||
| 4_JX227964 | BID-G1253 | JX227964 | (Newman et al., 2013) |
| 4_FJ0258543 | P026 | FJ025854 | (Koletzki et al., 2009) |
| 4_JF735127 | QC108 | JF735127 | (Lu et al., 2015) |
| 4_JF735132 | QC215 | JF735132 | (Lu et al., 2015) |
| 4_JF735131 | QC147 | JF735131 | (Lu et al., 2015) |
| 4_JF735130 | QC132 | JF735130 | (Lu et al., 2015) |
| 4_JF735129 | QC127 | JF735129 | (Lu et al., 2015) |
| 4_JF735138 | QC58 | JF735138 | (Lu et al., 2015) |
| 4_JF735135 | QC352 | JF735135 | (Lu et al., 2015) |
| 4_JF735134 | QC253 | JF735134 | (Lu et al., 2015) |
| Genotype 6 | |||
| 6_DQ2788914 | KM45, KM41 | DQ278891, DQ278893 | (Lu et al., 2006) |
| 6_JX183550 | QC273 | JX183550 | (Wang et al., 2013) |
| 6_JX183549 | KM35 | JX183549 | (Wang et al., 2013) |
| 6_JX183551 | TV257, VN139 | JX183551, KJ567644 | (Li et al., 2014) (Wang et al., 2013) |
| 6_JX183553 | TV533 | JX183553 | (Wang et al., 2013) |
| 6_JX183554 | L349 | JX183554 | (Wang et al., 2013) |
| 6_JX183558 | QC271 | JX183558 | (Wang et al., 2013) |
| 6_KJ470620 | HKP7 | KJ470620 | (An et al., 2014) |
| 6_KJ470621 | HKP16 | KJ470621 | (An et al., 2014) |
| 6_KJ470622 | HK25 | KJ470622 | (An et al., 2014) |
| 6_KJ470623 | HK26 | KJ470623 | (An et al., 2014) |
| 6_KJ470624 | HK38 | KJ470624 | (An et al., 2014) |
| 6_KJ470625 | HK43 | KJ470625 | (An et al., 2014) |
| 6_KC844039 | ZS96 | KC844039 | (Xu et al., 2013) |
| 6_KC844040 | ZS202 | KC844040 | (Xu et al., 2013) |
| 6_KJ567652 | TV566 | KJ567652 | (Li et al., 2014) |
| 6_KJ567648 | TV453 | KJ567648 | (Li et al., 2014) |
| 6_KJ567650 | TV548, TV443 | KJ567650, KJ567649 | (Li et al., 2014) |
| 6_MG878999 | 1316-1 | MG878999 | (Wu et al., 2018) |
Footnotes
1 Classification of sequences into genotypes but without subtype assignments using the format “genotype_Accession number”
2 Locus (or isolate name if locus is the same as the accession number).
3 Previously described as 4b (Koletzki et al., 2009)
4 Previously described as 6k (Lu et al., 2006)
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