References: Hadakaviridae
Capella-Gutiérrez, S., J. M. Silla-Martínez and T. Gabaldón (2009). trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972-3. [PubMed]
Fu, M., H. Zhang, M. Yin, Z. Han, Q. Bai, Y. Peng, K. Shafik, L. Zhai, N. Hong, W. Xu, G. Wang and I. Kotta-Loizou (2022). A novel heptasegmented positive-sense single-stranded RNA virus from the phytopathogenic fungus Colletotrichum fructicola. J Virol 96: e0031822. [PubMed]
Kanhayuwa, L., I. Kotta-Loizou, S. Özkan, A. P. Gunning and R. H. A. Coutts (2015). A novel mycovirus from Aspergillus fumigatus contains four unique dsRNAs as its genome and is infectious as dsRNA. Proc Natl Acad Sci USA 112: 9100-5. [PubMed]
Katoh, K. and D. M. Standley (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30: 772-80. [PubMed]
Khan, H. A., Y. Sato, H. Kondo, A. Jamal, M. F. Bhatti and N. Suzuki (2021). A second capsidless hadakavirus strain with 10 positive-sense single-stranded RNA genomic segments from Fusarium nygamai. Arch Virol 166: 2711-22. [PubMed]
Kotta-Loizou, I., R. H. A. Coutts and ICTV Report Consortium (2022). ICTV Virus Taxonomy Profile: Polymycoviridae 2022. J Gen Virol 103. [PubMed]
Kumar, S., G. Stecher, M. Li, C. Knyaz and K. Tamura (2018). MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol Biol Evol 35: 1547-9. [PubMed]
Lu, S., J. Wang, F. Chitsaz, M. K. Derbyshire, R. C. Geer, N. R. Gonzales, M. Gwadz, D. I. Hurwitz, G. H. Marchler, J. S. Song, N. Thanki, R. A. Yamashita, M. Yang, D. Zhang, C. Zheng, C. J. Lanczycki and A. Marchler-Bauer (2020). CDD/SPARCLE: the conserved domain database in 2020. Nucleic Acids Res 48: D265-8. [PubMed]
Minh, B. Q., H. A. Schmidt, O. Chernomor, D. Schrempf, M. D. Woodhams, A. von Haeseler and R. Lanfear (2020). IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol 37: 1530-4. [PubMed]
Sato, Y., A. Jamal, H. Kondo and N. Suzuki (2020a). Molecular characterization of a novel polymycovirus from Penicillium janthinellum with a focus on its genome-associated PASrp. Front Microbiol 11: 592789. [PubMed]
Sato, Y., W. Shamsi, A. Jamal, M. F. Bhatti, H. Kondo and N. Suzuki (2020b). Hadaka virus 1: a capsidless eleven-segmented positive-sense single-stranded RNA virus from a phytopathogenic fungus, Fusarium oxysporum. MBio 11: e00450-20. [PubMed]
Suzuki, N., S. A. Ghabrial, K. H. Kim, M. Pearson, S. L. Marzano, H. Yaegashi, J. Xie, L. Guo, H. Kondo, I. Koloniuk, B. I. Hillman and ICTV Report Consortium (2018). ICTV Virus Taxonomy Profile: Hypoviridae. J Gen Virol 99: 615-6. [PubMed]