Datasets used to assist in the classification of HEV isolates

  • HEV_HVR_subtypes_Dec_2023.txt
    • December 2023 FASTA alignment of Paslahepevirus balayani subtype nucleotide sequences including the (unaligned) hypervariable region.
  • HEV_reference_seqs_May_2020.fst; HEV_reference_seqs_May_2020.SSE
    • FASTA and SSE alignments of HEV reference sequences.
  • Orthoehepvirus_sse.SSE
    • SSE format of amino acid alignment of concatenated ORF 1 and ORF2 of Orthohepevirus species A, B, C and D and moose HEV. No attempt has been made to align hypervariable regions. Alignment generated in SSE using Muscle.
  • Orthohepevirus_fasta.FST
    • FASTA format of amino acid alignment of concatenated ORF 1 and ORF2 of Orthohepevirus species A, B, C and D and moose HEV. No attempt has been made to align hypervariable regions. Alignment generated in SSE using Muscle.

 

File name File Size
HEV_HVR_subtypes_Dec_2023.txt 526.2 KB
HEV_reference_seqs_May_2020.SSE 1.73 MB
HEV_reference_seqs_May_2020.fst 423.37 KB
Orthoehepvirus_sse.SSE 385.12 KB
Orthohepevirus_fasta.FST 72.43 KB