>Chicken_associated_smacovirus
-------------------------------------M---TEPKW---YDITISKAKCP
EEILRKWLDENGE----RYAYGRERGED-GYEHFQVRVVLRNPTSWATMREIW------G
HSGHCSPTSVRNFDYVLKE-----G-DF-------V----------CSW-----------
-----------------------IKVPDAIRN-AKLR--------PWQTAL---TDLK--
-----QND----REIDC---------IID-----------------LCGNT---------
-------GKSFVTKYMCM-------------------KNMAINIPSG---------LS-G
KDIMRM-CMKR-AKLGTYIFDIPRAGSKQAKETWSAIESIKNGYLWDDRYTWEEMWIDSP
R----------VFVFTNEYPKYDLLSEDRFR---------------FWAPGELGLIPLAK
----------------------------------
>Human_feces_smacovirus_3
-----------------------------------------MVQAWMIT--APRAHVSKR
AIRI-----MIDKNDCKKWIIAKEKGKN-GYEHWQIRIESSNTGFFEWCKLYL----PTA
HVEKAERGVDES-RYETKE-----G-QY---VLY-T----------DRVEILKQRFGKMR
--------------------PNQIRALEALEA-TNDR--------EVLVWYDEGGNVG--
--------------------------KSW-----------------LTGALW--------
-------ERGLAYYVPPTVDSV-KAMVQWVAS-CY--QSGGW------------------
RPYIIIDIPRS-W---KWSEQL-----------YVAIESIKDGLVYDTRYHSQCINIRGV
KV----------LVLTNTQPKLDKLSQDRWRICVFRGRRESALIVTLWAD----------
----------------------FYPPLGG-----
>Cotton_mastrevirus_TM5
----------------------------MPSANKNFRF---QSKYVFLTYPKCSS---QR
DDLFEFLWEKLTPFLIFFLGVASELHQD-GTTHYHALVQLDKRPCIRDPS-FFDFEGNHP
NIQPARNS-KQVLDYISKD-----G-DI---KTRGD----------FRDHKVSPRKSD--
-ARWRTIIQTATSKEEYLHMIKEEFPHEWA---TKLQ--------WLEYSANKLFPPQ--
---PEPYV----SPFTESDLRCHEDLQQW-------------------RDTHLYQVSIDA
YTLVHQVSIEQAQ------------------------SDLEW--MAD---------LTRT
REGLELESPAS-----------------TSVDQHVQGRPPGP------EISGDTIIGMEP
ST-----------------SPRTTNTPLTMSLT-------------TSPSNSSHYGSN--
----------------------------------
>Maize_streak_virus
--------------------------MASSSSNRQFSH---RNVNTFLTYPHCPE---NP
EIVCQMIWELVGRWTPKYIICAREAHRD-GDMHLHALIQTEKPVRITDSR-FFDIKGFHP
NIQSAK-SVNKVRDYILKE-----PLAL---FERGTFIPRKSSFLGNPSKGNSEKKPSKD
-EIMREIISHSTSKLEYLSMIRKEFPYDWATKLQYFEYSANKLFPEIQEEFI--SPHP--
-----PSS----PDLLCNESI-----KDW-----------------LQPNIFQVSPESYM
LLQPTCYTLEDAI------------------------SDLEW--MDK---------LS-S
QQMKEQESRAS-TSSVQ----------------QEQENQLG-------------------
-----PEA----------------------------------------------------
----------------------------------
>Bemisia-associated_genomovirus AdDF
---------------------------------MTFRF---AAKYGLLTYAQSDG--LDP
LSIVNHLGDLGAE-----CIVGRELHDDGGT-HYHAFFMFEKKFQSRNAR-VFDIDSYHP
NILRGIKTPESMYDYATKD-----G-DI---CGGGL---------ERPDPRGESSKNN--
-DDFWRGVFDAEGKEETLRCARELGVGLFGRYYFQVR--------AIAEEKARRSPLDYK
PDDSLEWELGPYPEL-----------TDW-CASYLGRRGGRPRSLVLVGPS---------
-------RTGKTTWARCLGGHFFFGGNFDMGQLIHDCDDIKY------------------
---AIFDDMPGLKYFPTWKFWLGAQDTFTVTDKY------KGKMCF--DWGRPVIWCNNR
DPREDPDADVDWLDANCIFVNVPADYPLIKQ-----------------------------
----------------------------------
>Tick-associated_genomovirus_2
-------------------------------MPAKYKLD--GEQFFMLTYPTTPADFDG-
----SGIIAILERLGCNYRV-GRELHQD-GKPHFHAMCCFDEPYTDGDARRTFTVGTRIP
NIRVRRTRPERGWDYVGKHAGTKEG-HH---IVGEK----------GTRPGGDEDSSERP
SNDSWHEIILARTREEFFDLAARLAPRQLACSFTSLSAYADWKYRPVKEEYV--TPEG--
-----DWS----VPFEL---------QDW-VDDNVRGTPGRPKGLVLFGAT---------
-------RLGKTVWARSLGSHY-YAGGLWDMA-EFHPQEQEYAIWDD---------ML-G
GLKAGYFNYKN-WLGGQFAFTI--------QDKYGKKKSI--------KWGKPSIFICNV
DP---RDEPPAFNDRVGMDWAWLEENCVF------YEVKEAIFRASTE------------
----------------------------------
>Thrips-associated_genomovirus_4
---------------------------------MVRRFKIDDEQFFMLTYPTTPDDFP--
---IDDLVGILDGLGCNYRI-GRELHED-GKPHFHAMVVFDNPYSDRDGRTTFRVGGRAP
NIRMRRTKPERGWDYVGKHAGSKDG-HY---IVAEK----------GDRPGGDGDSNDRS
TNDVWHEIILARTREEFFDLASRLAPRQLACSFTQLTSYADWKYRVVETPYA--SPEG--
-----EFE----VPIEL---------QQWVNANLRREHHGRPNGLVLFGAT---------
-------RLGKTVWARSLGQHY-YCAGLWDLS-RFD-ESVEYAIFDD---------MV-G
GLRAGYFNYKD-WLGGQFEFTV--------QDKYKHKKQI--------KWGKPAIYICNQ
D----PRTDITPMGKNAIEWDWMEENCVFYECT------ETIFRAST-------------
----------------------------------
>Faba_bean_necrotic_yellows_virus
---------------------------------MAR-----QVICWCFTLNNPL----SP
LSLHDSMK---------YLVYQTEQGEA-GNIHFQGYIEMKKRTSLAGMKKLL----PGA
HFEKRRGTQGEARAYAMKE-----DTRIEGPWEYG-----------EFIPTIEDKLR---
-EVMNDMKTTGKRPIEYI----EECCNTYDKSASTLR--------EFRGELKKKKAISSW
ELQRKPWM----DEVDALLQERDGRRIIW-----------------VYGPQG--------
-------GEGKTSYAKHLVKTR---------------DAF-Y--STG---------GK-T
ADIAFAWDHQE-LVLFDFPRSF------EEYVNYGVIEQLKNGIIQSGKYQS-VIKYSDY
VE---VIVFANFTPRSGM-----------------FSEDRIVYVYA--------------
----------------------------------
>Banana_bunchy_top_virus
-----------------------------------MAR---YVVCWMFTINNPAS-----
-------LPVMRD-EFKYMVYQVERGQE-GTRHVQGYVEMKRRSSLKQMRGFF----PGA
HLEKRKGSQEEARAYCMKE-----DTRIEGPFEFGA----------FKLSCNDNLFDV--
-IQDMRETHKRPLEYLYE------CPNTFDRSKDTLY--------RVQAELNKTKAMNSW
KTSFSSWT----SEVENIMAGPCHRRIIW-----------------VWPKW---------
-------RRRKDNLC-----------KYLMKT-----KNAFY--SPGGKSLDICRLYN-Y
EEIVIFDIPRC-----KEEYLN-----------YGLLEEFKNGIIQSGKYEP-VLKIVEY
VE---VIVMANFLPKEG-----------------------------IFSEDRIKLVAC--
----------------------------------
>Cardamom_bushy_dwarf_virus
-----------------------------------MAR---YVVCWMFTINNPSS-----
-------LPVMRD-EIKYMVYQVERGQE-GTRHVQGYVEMKRRSSLKQMRMFF----PGA
HLEKRKGTQEEARSYCMKE-----DTRIEGPFEFGV----------FKLACNDSLYDV--
-IQDMRLTNKRPLEYLYD------CPNTFDRSKDTLY--------RVQAEMNKTKAMESW
GNSYGSWT----EQVEELMAQPCHRRIIW-----------------VYGPNG--------
-------GEGKTTYA-----------KHLMKT-----RNAFY--TPGGKALDICRLYN-Y
EEIVIFDIPRC-----KEEYIN-----------YGIIEEFKNGIVQSGKYEP-VLKIVEY
VE---VIVMANFLPKEG-----------------------------IFSEDRIKVVAC--
----------------------------------
>HCRV-H
----------------------------MNSTNVSKPI---SGKNFLLTYNDSEDKIGIG
VDIAEHLIEKFQE-KVLFIAVGREIAPTTGMIHYHCLLMLKDRFFSRNTS-CFDFKNIHP
NFQTVRNNTRKTYLYVIKD-----N-DY---WETNP----------RFFEKEDDLKNKER
-IRKNKLLMEGDIMKAYL--DGEIGPVELIRA-QKIR--------AIKLQTE--PTMI--
-----KRE----APL-----------VIW-----------------FYGKT---------
-------GTGKTRKTIEMAEEL--KLKTWMSS-----DSLKW--FDG---------YC-N
QELAIIDDLRK-EILPNWAFLL------RLLDRYALIVQIKGGFT---RWNPKIIIITSP
VE---PHECFSWFNRQGEQQAWDSEDQLLRRLT--WDGIEQVYEFPLSTGDEEALEETL-
----------------ESWKA--KQADEE-N---
>HCRV-1
MLTTIKAKQKPYIYVRRCYVHIYNNIRDMNGTATKKPI---SGKNFLLTYNDPEDVIGMH
IDLTEHLTNTFEE-DLDFIAVGQETAPTTGTIHYHVILLLKNRLFTRNNA-VFDYKSIHP
NYQTIRNNIRKTYLYVIKG-----G-KY---SQSDL----------KRFELEDEKKGRER
-REKNKLLMNGDILKAYE--EGEIGPIEFIRA-QKIR--------SIKIQIE--PTMI--
-----KRD----APL-----------VIW-----------------FYGKT---------
-------GTGKTRKTMEIAEEL--NLKTWMSS-----DSLKW--FDG---------YC-N
QELAIIDDLRK-EILPNWAFLL------RLLDRYALIVQIKGGFT---RWNPKIIIITSP
VE---PHECFSWYNRQGEQQAWDSEEQLERRLT--WEGAVQIYEFPLSLGDQEALEETI-
----------------EMWKV--KEGRSN-----
>HCRV-G
----------------------------MNSNATKKPI---SGKNFLLTYNDPEDTIDTP
TNLAEHLTNSFAE-NLDFIAVGRETAPTTGTIHYHAILLLKNRLFTRNNA-VFDYKSIHP
NYQTIRNNVRKTYLYVIKG-----G-NY---TQSDL----------KRFELEDEKKLRDR
-IEKNKLLMKGDILKAYE--EGEIGAIEFIRA-QKIR--------SIKIQIE--PTMM--
-----KRD----MPL-----------VLW-----------------FYGKT---------
-------GSGKTRMTLEIAEDL--HLNAWISG-----DTLKW--FDG---------YN-G
QEVAIIDDLRK-EILPNWAFLL------RLLDRYSLIVQIKGGFT---RWNPKIIIITCP
VE---PHECFSWYNKQGEQQAWDSEEQLLRRLT--WEGVEQIYEFPLSTGDQEALEETI-
----------------ESWKA--KQGRSN-----
>HCRV-I
----------------------------MLGHSVCKLI---NAKRFMLTYNDPMEVI-DH
LDLCEHLTELLSE-NLEFLVVSKEKAPTTQMVHYHALLIAKEKIYKRDIN-FFDYKEIHP
NIESVKGNPKKAYEYVIKD-----G-NY---WQSSL----------NYFKDVNEEKLKER
-IEKNRLLLEGDVMEEFE--NGRIGAIDLIRA-SKIR--------TIKVQMN--CNIN--
-----KRQ----APL-----------IMW-----------------FYGAT---------
-------GSGKTRKALEMAEEL--KLRLWISN-----DSLKW--FDG---------YC-G
QEIAVLDDLRK-DILPTWAFLL------RLLDRYPLIVQIKGGFV---KWVPRIIIITCP
VA---PEECFSWFNKNGEQQQWDRQEQLNRRLT--WEEVEQIYEFPLSLGDQEEINLTI-
----------------ENWKI--KVMNNF-I---
>k99_7875-SRR5088
----------------------------MLGHSVCKLI---NAKRFMLTYNDPMEVI-DH
LDLCEHLTELLSE-NLEFLVVSKEKAPTTQMVHYHALLIAKEKIYKRDIN-FFDYKEIHP
NIESVKGNPKKAYEYVIKD-----G-NY---WQSSL----------NYFKDVNEEKLKER
-IKKNRLLLEGDVMEEFE--NGKIGAIDLIRA-SKIR--------TIKVQLN--CNIN--
-----KRQ----APL-----------IMW-----------------FYGAT---------
-------GSGKTRKALEMAEEL--KLRLWISN-----DSLKW--FDG---------YC-G
QEIAVLDDLRK-DILPTWAFLL------RLLDRYPLIVQIKGGFV---KWVPRIIIITCP
VA---PEECFSWFNKNGEQQQWDRQEQLNRRLT--WEEVEQIYEFPLSLGDQEEINLTI-
----------------ENWKI--KEMNNF-I---
>k99_67773-SRR177
----------------------------MLSHSSCKLL---NAKRFLLTYNDVEEKIPSA
LDLSEHLINLTSE-KMEFVVVSEETAPTTGMKHYHALVILKDNLYSRKLD-YFDYLMIHP
NIEAVRGNAQKAYEYVIKD-----G-KY---WQSDL----------NYFKVDYGKKNNER
-IKRNKLLMNGDIFEEYE--KGNIGPIDLIRA-AKIR--------AIKVQLE--PTMI--
-----KRT----PPL-----------IMW-----------------FYGNT---------
-------GSGKTRKAVEIAEQL--KARIWISN-----DSLKW--FDG---------YC-G
QEIAVFDDLRR-DILPTWAFLL------RLLDRYPLIVQIKGGFV---KWEPKIIIITCP
VQ---PEECFKWYNKQGEEQQWDRQEQLNRRLT--WEEKEQVYEFPLSLGDKEEMELTI-
----------------ENWKA--KQADDN-----
>KY052047.1
----------------------------MLSHSSCKLL---NAKRFLLTYNDVXGKIPSA
LDLSEHLINLTSE-KMEFVVVSEETAPTTGMIHYHALVILKDNLYSRKLD-YFDYLMIHP
NIEAVRGNAQKAYEYVIKD-----G-KY---WQTDL----------NYFKVDGGKKNNER
-RERNKLLMNGDIFEEYE--KGNIGPIDLIRA-AKIR--------AIKVQYN--NNMT--
-----KRT----PPL-----------IMW-----------------FYGNT---------
-------GSGKTRKAVEIAEEL--KARIWISN-----DNLKW--FDG---------YC-G
QEVAVFDDLRR-DILPTWAFLL------RLLDRYPLIVQIKGGFV---KWEPKIIIITCP
VP---PEECFKWYNKQGEEQQWDRQEQLNRRLT--WEEKEQVYEFPLSLGDGEEMELTI-
----------------ENWKT--KQADDN-----
>PoSCV-5
--------------------------------MSSVRL---QNKNLFLTYNDPEETITGP
AWLLNKLAEQLEKYQPYYGVCGEEKAPTTGTKHYHLLIMCKNPVISKNGQ-VIEIKGIAP
HIEKIRNNLRGVIKYVKKD-----G-NI---AELNK----------NLCPVKLDKLER--
-KEKADLMLTGDLEKAFI--DGTLGPIEVIRA-EKLR--------KI-FQVY--RKPE--
-----PYS----KKL-----------IMW-----------------YRGET---------
-------GEGKTRTAVELAEEF--ELSYWITN-----ESLRW--FDG---------YN-G
QELVIIDDFRQ-KMITDWNFLL------RLLDGYGLSVPVKGGYV---AWKPKIIIITTP
AT---PQEAFQWMNKDGELQNWDHLDQLMRRLT--HDDEEQVYQFPLWEEDKQKLMNTVR
QFLGIE---NDEAMVEEELSMSPILPEPTQIDEA
>k119_45499-mgm46
--------------------------------MAHIRL---DQKTIFATYLDTENKIVGP
TILVSTLMERFEKYNPIYATAGKEVAPSTGTIHYHAVIICELNVRTKNGDELLKVEGILP
HLERIRYGIRKIAEYCQKD-----G-NF---AEGGK----------KPWKELESK-----
-KEKNQRLLQGDLEQLYL--NGDIGPVEIIRA-EKIR--------AI-FAKN--SKPD--
-----KYK----KRI-----------VMW-----------------FKGET---------
-------GEGKTRTAVEIAEKF-YNGDYWISN-----DSLRW--FDG---------YH-G
QKLAIIDDFRK-AMLTDWSFLL------RLLDGYNLIVQTKGGFT---KWNPETIIITSP
AT---PEEAFSWTNNEGETKQWDKANQLQRRLT--HNDVDQIYNFPLWDEDKLKLENVFR
KEFGMDLL-AEENMMAEDWSI--IEPEGF-ITPG
>HCRV-C
---------------------------------MTLRI---QHKNLYLTYLDQNKQISGP
SWLLSTLAERLEKYETEYGICCREVAPTTGTLHYHLLIKCKKVISVRNANTLLEMEGIRP
HVEKVNNNLRMIVKYIKKN-----G-DF---AQLNP----------ENAP-KDATLNK--
-KEKAELMLNGNWEELFL--NGELGAIDIIRA-QKLK--------TI-FDMN--RPPK--
-----EYK----KRL-----------VMW-----------------FHGDT---------
-------GEGKTKTALEIAKQY-YDNSYWMSS-----DSLKW--FDG---------YR-G
QKVAIIDDFRK-GMLSDWSFLL------RLLDGYNLLVQIKGGFT---TWNPELIIITSP
AT---PEQAFKWTNKEGEEQQWDKQEQLTRRIT--HEDIAQIYEFPMWEDELKRLEKTIR
KFLGLP---EEEFLTAEDWSI--IEPEGF-VTPG
>k141_3621-SRR616
---------------------------------MTLRI---QHKNLYLTYLDQNKQISGP
SWLLSTLAERLEKYETEYGICCREVAPTTGTLHYHLLIKCKKVITVRNANTLLEMEGIRP
HVEKVNNNIRMIIKYIKKN-----G-DF---AQLNP----------ENAP-KDATMNK--
-KEKAELMLNGNWEELFL--NGELGAIDIIRA-QKLK--------TI-FDMN--RPPK--
-----EYK----KRL-----------VMW-----------------FHGDT---------
-------GEGKTKTALEIAKQY-YDNSYWMSS-----DSLKW--FDG---------YR-G
QKVAIIDDFRK-GMLSDWSFLL------RLLDGYNLLVQIKGGFT---TWNPELIIITSP
AT---PEQAFKWTNKEGEEQQWDKQEQLTRRIT--HEDIAQIYEFPMWEDELKRLEKTIR
KFIGLP---EDEFLTAEDWSI--IEPEGF-ITPG
>Contig1-SRR17837
---------------------------------MTLRL---QNTNIYLTYMDKEKKIAGP
AWLLTTLAERLERYETEYGICCRETAPSTGTLHYHLFIKCKRMVSIRNANSVIEMEGIIP
HIEKVNNNIKRIIDYIKKN-----G-DI---AVLNP----------ENAP-KNTMISK--
-QEKANLMITGDLEKLFI--DGTLGAVDIIRA-EKLR--------SI-FIKY--SQPT--
-----GYK----QRM-----------VLW-----------------FKGET---------
-------GEGKTRTALKIAEQY-YNNSYWLSS-----DTLKW--FDG---------YT-N
QRVAIIDDFRK-NMLTDWSFIL------RLLDGYNLIVQVKGGFT---SWKPELIIITSP
AT---PEQAFSWTNKEGEEQPWDKQEQLTRRLT--SYDELQVYEFPLWEQERVRLENTIR
KRLEMPLLDQENMMPEEEWST--ILPEGF-ITPS
>k119_35206-SRR20
---------------------------------MTLRL---QHKNIYATYLDSEKKIFDP
VILITELCERLDKYGIRYGIACKEVAPTTGTVHYHVLIMCNKTVSVRNAKNLLEIEGIMP
HLEKINNNIIKVIQYIKKD-----G-YY---NEVNK----------ENEP-KTEKMNK--
-ADKAELMINGNWKELFM--TGKLGAIDIIRA-QKLK--------TI-FDLN--RPPK--
-----KYE----QKL-----------ILW-----------------FYGET---------
-------GEGKTRKAVETAEMY--NLTYWLSN-----DSLRW--FDG---------YQ-G
QQIAIIDDFRK-SMLTDWSYLL------RILDGYSLYVQIKGGFT---TWEPKIIIITSP
AT---PQEAFKWIDKEGEERTWDKEEQLTRRLT--FKEELQVYQFPLWKEEEKRLERTLR
QFLGLP---EEENMMPEEWSI--IEPEGF-ITPS
>Contig1-ERR84391
---------------------------------MTLRL---QNKNLYLTYLDTEERIFSE
TILITELAERLDKYVVKYAIACKEVAPTTGTVHYHCLICCENVISTRNGKELLTIENVTP
HVERIQNNLVNIVNYIKKD-----G-SF---AEVNK----------ENAP-RRKEIEK--
-REKAELMINGNLRELFM--EGVLGAIDIIRA-EKLR--------NI-FQVQ--APAD--
-----KYQ----KKL-----------ILW-----------------FKGET---------
-------GEGKTKTAVDIAERY-FNGEYWMSN-----ETLKW--FDG---------YR-G
QPVAIIDDFRK-SMLTEWSFLL------RLLDGYNLIVQVKGGFV---KWQPKVIIVTSP
AS---PSEAFQWVNKEGEIIEWDKQVQLTRRLT--YEDEEQIYQFPLWNQDQLKLENTIR
KYLGLAPM-EEESMFPEEWSV--IEPEGF-ITPG
>HCRV-2
---------------------------------MTLRL---QNKNLYLTYLDTEERIFSE
LILITELAERLDKYGVKYAIACKEVAPSTGTVHYHCLICCENVISTRNGKELLTIENIMP
HVGRIQNNLVNIVNYIKKD-----G-SF---AEVNK----------ENAP-KKKEMEK--
-REKAELMINGNLRELFM--EGVLGAIDIIRA-EKLR--------NI-FQVQ--APAD--
-----KYQ----KKL-----------ILW-----------------FKGET---------
-------GEGKTKTAVDIAERF-FNGEYWMSN-----ETLKW--FDG---------YR-G
QPVAIIDDFRK-SMLTEWSFLL------RLLDGYNLIVQVKGGFV---KWQPKVIIVTSP
AS---PSEAFQWVNKEGEIIEWDKQVQLTRRLT--YEDEEQIYNFPLWNQDQLKLENTIR
KYLGLAPM-EEESMFPEEWSV--IEPEGF-ITPG
>HCRV-D
---------------------------------MTLRL---QNKNLYLTYLDTEERIFSE
LILITELAERLDKYGVKYAIACKEVAPSTGTVHYHCLICCENVISTRNGKELLTIENIMP
HVGRIQNNLVNIVNYIKKD-----G-SF---AEVNK----------ENAP-KKKEMEK--
-REKAELMINGNLRELFM--EGVLGAIDIIRA-EKLR--------NI-FQVQ--APAD--
-----KYQ----KKL-----------ILW-----------------FKGET---------
-------GEGKTKTAVDIAERY-FNGEYWMSN-----ETLKW--FDG---------YR-G
QPVAIIDDFRK-SMLTEWSFLL------RLLDGYNLIVQVKGGFV---KWQPKVIIVTSP
AS---PSEAFQWVNKEGEIIEWDKQVQLTRRLT--YEDEEQIYNFPLWNQDQLKLENTIR
KYLGLAPM-EEESMFPEEWSV--IEPEGF-ITPG
>k119_207-SRR5805
---------------------------------MSLTF---DGKNLYLTFMDPEKKIDGP
ASLINELIEKLLQYEPKYIVAGKEQAPSTGTTHYHVFINLNKRLHTRHLEEFICIKTIRP
ELERVRNNCAKIIQYCKKG-----N-NY---AELGK----------DEWT-KNKSLNK--
-EEKANLMLKGDLEKLFL--EGTLGAIDVIRA-QKLK--------NI-FNLE--RKST--
-----KYQ----QKL-----------VLW-----------------FKGET---------
-------GEGKTRMATELAELF--ETEYWMSN-----ENLKW--FDG---------YN-S
QEIAIFDDFRK-SMLGDWSYLL------RLLDGYGLYAPIKGGFT---TWKPKIIIITSP
AT---PHEAFSWVNKEGEEQGWDKEEQLIRRLT--WNEELQVYDFPLWPEKKEQLIKTVE
KFLGRSQK-QEDIMLPEEWSI--IEPEGF-ITPG
>k119_49066-SRR17
---------------------------------MSLHL---DCVNLLLTYNDPEGKIFGD
MSLLDQLIENFKEYEPIYGVCSKEKAPTTGMTHYHVYIKLKRRCQKKDGRSLLIVETIRP
NIERVRNNIKAVIKYVMKG-----G-YY---AEYGT----------CPVNLKEEENNK--
-VKKAQMMMTGNLEELFL--NGELGAVDVIRA-QKLK--------TI-FQLA--RPME--
-----KYS----KKL-----------VLW-----------------FKGET---------
-------GEGKTRKALEIAEMF--NLSFWMTN-----DSLKW--FDG---------YT-G
QELVIMDDFRK-NMLGDWNYLL------RLLDGYGLAVQVKGGFA---IWKPKIIIITSP
AT---PHEAFSWVNKEGEEQGWDKEEQLIRRLT--HEDEEQIYQFPLWKEDEERMTLTIK
KFLGLPIL-EEENMLPEEWST--ILPEGF-ITPS
>k141_4644-SRR580
---------------------------------MSLRL---DCVNLLLTYNDPEGKIFGD
MSLLDQLIENFKEYEPIYGVSCKEKAPTTGMTHYHVYIKLKRRCQKKDGRSLLIVETIRP
NIERVRNNIKAIIKYVKKG-----G-YY---AEYGT----------CPVELNDTKISK--
-IDKANVMINGNLEELYL--NGTLGAVDVIRA-QKLR--------SI-FQLA--RPVE--
-----KYS----KKL-----------VLW-----------------FKGET---------
-------GEGKTRKAFEIAEKF--NLSFWMTN-----DSLKW--YDG---------YT-G
QELVIIDDFRK-NMLGDWNYLL------RLLDGYGLAVQVKGGFT---TWKPKIIIITSP
AT---PHEAFSWVNKEGEEQGWDKEDQLIRRLT--HEDEEQIYQFPLWEQDEKRLEATIR
QFLGLP---EEEFLTAEDWSI--IEPEGF-ITPS
>Contig1-SRR58057
---------------------------------MSLRL---DCVNLLLTYNDPEGKIFGD
MSLLDQLIENFKEYEPIYGVSCKEKAPTTGMTHYHVYIKLKKRCQKKDGRSLLIVETIRP
NIERVRNNIKAIIKYVKKG-----G-YY---AEYGT----------CPVELKDTKISN--
-IDKANIMINGNLEELYL--NGTLGAVDVIRA-QKLR--------SI-FQLA--RPVE--
-----KYS----KKL-----------VLW-----------------FKGET---------
-------GEGKTRKAFEIAEKF--NLSFWMTN-----DSLKW--YDG---------YT-G
QELVIIDDFRK-NMLGDWNYLL------RLLDGYGLAVQVKGGFT---TWKPKIIIITSP
AT---PHEAFSWVNKEGEEQGWDKEDQLIRRLT--HEDEEQIYQFPLWEQDEKRLEATIR
RFLGLP---EEENMFPEDWSI--IEPEGF-ITPG
>k141_270-SRR5805
---------------------------------MSLRL---DCVNLLLTYNDPEGKIFGD
MSLLDQLIENFKEYEPIYGVSCKEKAPTTGMTHYHVYIKLKRRCQKKDGRSLLIVETIRP
NIERVRNNIKAVIKYVKKG-----G-YY---AEYGT----------CPVELKDTKISK--
-IDKANVMINGNLEELYL--NGTLGAVDVIRA-QKLR--------SI-FQLA--RPVE--
-----KYS----KKL-----------VLW-----------------FKGET---------
-------GEGKTRKAFEIAEKF--NLSFWMTN-----DSLKW--YDG---------YT-G
QELVIIDDFRK-NMLGDWNYLL------RLLDGYGLAVQVKGGFT---TWKPKIIIITSP
AT---PHEAFSWVNKEGEEQGWDKEDQLIRRLT--HEDEEQIYQFPLWEQDEKRLEATIR
RFLGLP---EEESMFPEEWSI--IEPEGF-ITPG
>Cyclovirus_VN
---------------------------------MAKNS---TVRRFCWTLNNYTE---ED
VDVLQKDLTELCK----FAIFGRETCPSTGTKHLQGFCNLQRPKRFNSIRQIF---GGRA
HIERAKGTDLENKEYCSKG-----G-DV---WECG-------------TPCAQGTRTDL-
--EKVVSVIEGGERSLKN--LAIQFPIAYIKYYKGIE--------QY-IRIAHGNSER--
-----DFK----TEVF----------YFW-------------------GPT---------
-------GTGKSRKAREESLAL--GDTYYK-------PRGEW--WDG---------YT-G
QPCVVIDDFYG-WI--KYDELL------KICDRYPYRVPVKGGYE---NFVSKYIWITSE
RC---LEEVYRFIGYDC--------SSLRRRLN-----KEIFFGYIMSHLLTSKILLII-
----------------------------------
>Cyclovirus_PK5006
---------------------------------MANR----TVRRFCFTWNDHPV---EA
YEKCEKFIEKFCK----YGIVGEEYAPTTGMPHLQGFCNLNKPTRFSTIKKHLD---NSI
HIEKANGTDEQNQKYCSKS-----G-IF---FESG-------------VPNKQGQRNDL-
--QSLVEFIHEKRPTIRD--IATEHPTTYIRYFRGIE--------RM-LQLVNPIKQR--
-----DFK----TEVY----------YYW-------------------GPP---------
-------GTGKSRRALEEAQAFNTESIYYK-------PRGLW--WDG---------YE-Q
QDSVIIDDFYG-WI--KYDEML------KIMDRYPYKVQVKGAFQ---EFTSKKIFITSN
VD---TDELYKFVGYTT--------AAFERRIT-----------------NKEYMA----
----------------------------------
>Cyclovirus_Chimp12
----------------------------------MSNR---TVRKFCFTWNNYEF---DA
YAKCETFLNNFAK----YGSVGEELCPSTGTPHLQGYVNLIKPTRFSTIKKHLH---NAI
HIEKANGSDEQNQTYCRKS-----G-IF---FEKGE-------------PIKQGQRTDLQ
-LLVKDTMEPSNTLKDIA----TKHPIAYIRYFRGIQ--------EL-RRMVLPVPPR--
-----NYP----TEVR----------YYW-------------------GPP---------
-------GSGKSRRALQEATEISTNGIYYK-------PRGQW--WDG---------YV-Q
QSCVIIDDFYG-WI--KYDEIL------KICDRYPYKVQIKGGYE---EFTSTHIWFTSN
VD---TDLLYKFNNYIN--------TAFERRIT-----------------VKEHITLS--
----------------------------------
>Beak_and_feather_disease_virus
-------------------------------MPSKEGS---GCRRWCFTLNNPTD---GE
IEFVRTLGPD----EFYYAIVGREKGDQ-GTPHLQGYFHFKNKKRLSALKKFL----PRA
HFERAKGSDADNEKYCSKE-----GDVI---LTLGI-------------VARDGHRAF--
-DGAVAAVMSGRKMKEVA----REFPDIYVRHGRGLH--------NLSLLVG--SRPR--
-----DFK----TDVD----------VIY-------------------GPP---------
-------GCGKSRWANEQP-----GTKYYK-------MRGEW--WDG---------YD-G
EEVVVLDDFYG-WL--PYCEML------RLCDRYPHKVPVKGAFV---EFTSKRIIITSN
KP---PET---WYKEDCDP------KPLFRRFT--R----------VWWYNVDKLEQVRP
DFL--------------------AHPINF-----
>Porcine_circovirus_2
-----------------------------MPSKKNGRSGPQPHKRWVFTLNNPSE---DE
RKKIRELPISL----FDYFIVGEEGNEEGRTPHLQGFANFVKKQTFNKVKWYL---GARC
HIEKAKGTDQQNKEYCSKE-----GNLL---MECGA-------------PRSQGQRSDLS
-TAVSTLLESGSLVTVAE-----QHPVTFVRNFRGLA--------EL-LKVSGKMQKR--
-----DWK----TNVH----------VIV-------------------GPP---------
-------GCGKSKWAANFADP---ETTYWKP------PRNKW--WDG---------YH-G
EEVVVIDDFYG-WL--PWDDLL------RLCDRYPLTVETKGGTV---PFLARSILITSN
QT---PLE---WYSSTAVP----AVEALYRRIT----------SLVFWKNATEQSTEEGG
QFVTLSPPCPEF-----------PYEINY-----
>Canine_circovirus_strain XF16
---------------------MAQAQVDQRGRDSRRGN---PVRRWCFTINNPTP---EE
EDAVKNLAP-----DAKYLICGREVGEN-GTPHLQGFVNLKKTARMGALKARL---GGRG
HFEPARGDDCSNKDYCSKG-----GDIL---IESG-------------EVSRQGKRNDL-
-HDAVEKLKETKSLAAVA----AAYPETYVKFSRGLR--------ELLLISPEMTTPR--
-----TWK----TEVE----------VLC-------------------GPP---------
-------GCGKSRYCMETA-----PNAYWK-------PRGKW--WDG---------YD-G
HQDVILDDFYG-WL--PFDDML------RLCDRYPLRVETKGGTM---NFLARRIFITSN
RL---PHE---WYSDE-----ISNKDALYRRLT----------LIKVWDGGNFIPVPHF-
-----------------------MFPHMYNY---