References: Bacilladnaviridae

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Gebhard, L. J., Y. Tomaru, K. Okamoto and A. Munke (2025). Structural diversity and conservation among CRESS-DNA bacilladnaviruses revealed through cryo-EM and computational modelling. Virol J 22: 391. [PubMed]

Guindon, S., J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk and O. Gascuel (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-21. [PubMed]

Hongo, Y. and Y. Tomaru (2025). Transcriptomic insights into host transcriptional manipulation by ssDNA and ssRNA viruses in the marine planktonic diatom Chaetoceros tenuissimus. Virus Res 359: 199605. [PubMed]

Katoh, K. and D. M. Standley (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30: 772-80. [PubMed]

Kazlauskas, D., A. Dayaram, S. Kraberger, S. Goldstien, A. Varsani and M. Krupovic (2017). Evolutionary history of ssDNA bacilladnaviruses features horizontal acquisition of the capsid gene from ssRNA nodaviruses. Virology 504: 114-21. [PubMed]

Kimura, K. and Y. Tomaru (2013). Isolation and characterization of a single-stranded DNA virus infecting the marine diatom Chaetoceros sp. strain SS628-11 isolated from western Japan. PLoS One 8: e82013. [PubMed]

Kimura, K. and Y. Tomaru (2015). Discovery of two novel viruses expands the diversity of single-stranded DNA and single-stranded RNA viruses infecting a cosmopolitan marine diatom. Appl Environ Microbiol 81: 1120-31. [PubMed]

Krupovic, M., A. Varsani, D. Kazlauskas, M. Breitbart, E. Delwart, K. Rosario, N. Yutin, Y. I. Wolf, B. Harrach, F. M. Zerbini, V. V. Dolja, J. H. Kuhn and E. V. Koonin (2020). Cressdnaviricota: a virus phylum unifying seven families of Rep-encoding viruses with single-stranded, circular DNA genomes. J Virol 94: e00582-20. [PubMed]

Munke, A., K. Kimura, Y. Tomaru, H. Wang, K. Yoshida, S. Mito, Y. Hongo and K. Okamoto (2022). Primordial capsid and spooled ssDNA genome structures unravels ancestral events of eukaryotic viruses. MBio 13: e0015622. [PubMed]

Nagasaki, K., Y. Tomaru, Y. Takao, K. Nishida, Y. Shirai, H. Suzuki and T. Nagumo (2005). Previously unknown virus infects marine diatom. Appl Environ Microbiol 71: 3528-35. [PubMed]

Tomaru, Y., Y. Shirai, H. Suzuki, T. Nagumo and K. Nagasaki (2008). Isolation and characterization of a new single-stranded DNA virus infecting the cosmopolitan marine diatom Chaetoceros debilis. Aquat Microb Ecol 50: 103-12.

Tomaru, Y., Y. Shirai, K. Toyoda and K. Nagasaki (2011). Isolation and characterisation of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus. Aquat Microb Ecol 64: 175-84.

Tomaru, Y., K. Toyoda and K. Kimura (2015). Marine diatom viruses and their hosts: Resistance mechanisms and population dynamics. Perspectives in Phycology 2: 69-81.

Tomaru, Y., K. Toyoda, K. Kimura, N. Hata, M. Yoshida and K. Nagasaki (2012). First evidence for the existence of pennate diatom viruses. ISME J 6: 1445-8. [PubMed]

Tomaru, Y., K. Toyoda, K. Kimura, Y. Takao, K. Sakurada, N. Nakayama and K. Nagasaki (2013a). Isolation and characterization of a single‐stranded RNA virus that infects the marine planktonic diatom Chaetoceros sp.(SS08‐C03). Phycol Res 61: 27-36.

Tomaru, Y., K. Toyoda, H. Suzuki, T. Nagumo, K. Kimura and Y. Takao (2013b). New single-stranded DNA virus with a unique genomic structure that infects marine diatom Chaetoceros setoensis. Sci Rep 3: 3337. [PubMed]

Toyoda, K., K. Kimura, N. Hata, N. Nakayama, K. Nagasaki and Y. Tomaru (2012). Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp.(strain TG07-C28). Plankton and Benthos Research 7: 20-8.

Varsani, A., J. M. Custer, I. N. Cobb, C. Harding, C. L. Collins, C. Suazo, J. Schreck, R. S. Fontenele, D. Stainton, A. Dayaram, S. Goldstein, D. Kazlauskas, S. Kraberger and M. Krupovic (2025). Bacilladnaviridae: refined taxonomy and new insights into the biology and evolution of diatom-infecting DNA viruses. J Gen Virol 106: e002084. [PubMed]